Fix dependency-locking config (#276)

* Fix dependency-locking config

Reenable dependency locking after a bug errorneouly turned it off.

Removed the guava-related workaround that forcefully resolve to
the -jre distribution.

Enabled locking for buildSrc by updating its property file.

Updated all lock files.

util/gradle/dependency-locks/testCompileClasspath.lockfile

@@ -1,6 +1,7 @@
 # This is a Gradle generated file for dependency locking.
 # Manual edits can break the build and are not advised.
 # This file is expected to be part of source control.
+antlr:antlr:2.7.7
 aopalliance:aopalliance:1.0
 args4j:args4j:2.33
 cglib:cglib-nodep:2.2
@@ -8,6 +9,7 @@ com.beust:jcommander:1.60
 com.fasterxml.jackson.core:jackson-annotations:2.9.8
 com.fasterxml.jackson.core:jackson-core:2.9.9
 com.fasterxml.jackson.core:jackson-databind:2.9.8
+com.fasterxml:classmate:1.3.4
 com.github.luben:zstd-jni:1.3.8-3
 com.google.api-client:google-api-client-appengine:1.29.0
 com.google.api-client:google-api-client-jackson2:1.27.0
@@ -119,10 +121,11 @@ com.kohlschutter.junixsocket:junixsocket-native-common:2.0.4
 com.squareup.okhttp3:okhttp:3.11.0
 com.squareup.okhttp:okhttp:2.5.0
 com.squareup.okio:okio:1.14.0
-com.sun.istack:istack-commons-runtime:3.0.5
-com.sun.xml.fastinfoset:FastInfoset:1.2.13
+com.sun.istack:istack-commons-runtime:3.0.7
+com.sun.xml.fastinfoset:FastInfoset:1.2.15
 com.thoughtworks.paranamer:paranamer:2.7
 com.thoughtworks.qdox:qdox:1.12.1
+com.zaxxer:HikariCP:3.2.0
 commons-codec:commons-codec:1.11
 commons-logging:commons-logging:1.2
 dnsjava:dnsjava:2.1.7
@@ -163,6 +166,7 @@ javax.annotation:jsr250-api:1.0
 javax.inject:javax.inject:1
 javax.jdo:jdo2-api:2.3-eb
 javax.mail:mail:1.4
+javax.persistence:javax.persistence-api:2.2
 javax.servlet:servlet-api:2.5
 javax.transaction:transaction-api:1.1
 javax.validation:validation-api:1.0.0.GA
@@ -171,9 +175,9 @@ jline:jline:1.0
 joda-time:joda-time:2.9.2
 junit:junit:4.12
 net.bytebuddy:byte-buddy-agent:1.9.7
-net.bytebuddy:byte-buddy:1.9.7
-net.java.dev.jna:jna-platform:5.2.0
-net.java.dev.jna:jna:5.2.0
+net.bytebuddy:byte-buddy:1.9.11
+net.java.dev.jna:jna-platform:5.3.1
+net.java.dev.jna:jna:5.3.1
 org.apache.avro:avro:1.8.2
 org.apache.beam:beam-model-job-management:2.11.0
 org.apache.beam:beam-model-pipeline:2.11.0
@@ -186,7 +190,7 @@ org.apache.beam:beam-sdks-java-extensions-protobuf:2.11.0
 org.apache.beam:beam-sdks-java-io-google-cloud-platform:2.11.0
 org.apache.beam:beam-vendor-grpc-1_13_1:0.2
 org.apache.beam:beam-vendor-guava-20_0:0.1
-org.apache.commons:commons-compress:1.18
+org.apache.commons:commons-compress:1.19
 org.apache.commons:commons-exec:1.3
 org.apache.commons:commons-lang3:3.8.1
 org.apache.commons:commons-text:1.6
@@ -207,17 +211,24 @@ org.checkerframework:checker-qual:2.5.2
 org.codehaus.jackson:jackson-core-asl:1.9.13
 org.codehaus.jackson:jackson-mapper-asl:1.9.13
 org.codehaus.mojo:animal-sniffer-annotations:1.17
+org.dom4j:dom4j:2.1.1
 org.easymock:easymock:3.0
-org.glassfish.jaxb:jaxb-core:2.3.0
-org.glassfish.jaxb:jaxb-runtime:2.3.0
-org.glassfish.jaxb:txw2:2.3.0
+org.glassfish.jaxb:jaxb-runtime:2.3.1
+org.glassfish.jaxb:txw2:2.3.1
 org.hamcrest:hamcrest-all:1.3
 org.hamcrest:hamcrest-core:1.3
 org.hamcrest:hamcrest-library:1.3
+org.hibernate.common:hibernate-commons-annotations:5.1.0.Final
+org.hibernate:hibernate-core:5.4.4.Final
+org.hibernate:hibernate-hikaricp:5.4.4.Final
+org.javassist:javassist:3.24.0-GA
+org.jboss.logging:jboss-logging:3.3.2.Final
+org.jboss.spec.javax.transaction:jboss-transaction-api_1.2_spec:1.1.1.Final
+org.jboss:jandex:2.0.5.Final
 org.jetbrains:annotations:17.0.0
 org.joda:joda-money:0.10.0
 org.json:json:20160810
-org.jvnet.staxex:stax-ex:1.7.8
+org.jvnet.staxex:stax-ex:1.8
 org.mockito:mockito-core:2.25.0
 org.mortbay.jetty:jetty-util:6.1.26
 org.mortbay.jetty:jetty:6.1.26
@@ -227,7 +238,8 @@ org.ow2.asm:asm-commons:6.0
 org.ow2.asm:asm-tree:6.0
 org.ow2.asm:asm-util:6.0
 org.ow2.asm:asm:6.0
-org.rnorth.duct-tape:duct-tape:1.0.7
+org.postgresql:postgresql:42.2.6
+org.rnorth.duct-tape:duct-tape:1.0.8
 org.rnorth.visible-assertions:visible-assertions:2.1.2
 org.rnorth:tcp-unix-socket-proxy:1.0.2
 org.scijava:native-lib-loader:2.0.2
@@ -241,9 +253,12 @@ org.seleniumhq.selenium:selenium-opera-driver:3.141.59
 org.seleniumhq.selenium:selenium-remote-driver:3.141.59
 org.seleniumhq.selenium:selenium-safari-driver:3.141.59
 org.seleniumhq.selenium:selenium-support:3.141.59
-org.slf4j:slf4j-api:1.7.26
-org.testcontainers:selenium:1.10.7
-org.testcontainers:testcontainers:1.10.7
+org.slf4j:slf4j-api:1.7.28
+org.testcontainers:database-commons:1.12.1
+org.testcontainers:jdbc:1.12.1
+org.testcontainers:postgresql:1.12.1
+org.testcontainers:selenium:1.12.1
+org.testcontainers:testcontainers:1.12.1
 org.threeten:threetenbp:1.3.3
 org.tukaani:xz:1.8
 org.w3c.css:sac:1.3